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GitHub
Preprints
Senovilla-Ganzo R, Bekiari C, Rueda-Alaña E, Yamada T,
Zaremba B, Aransay AM, Escobar L, Nilsson MM, Grillo M,
Kaessmann H, García-Moreno F†.
A dual genetic constraint underlies the conservation of early brains in vertebrates.
bioRxiv (2025).
Link
Yamada T†, Sepp M, Sarropoulos I†, Kaessmann H†.
Gene regulatory innovations from transposable elements in mammalian cerebellum development.
bioRxiv (2025).
Link / Code
Sarropoulos I# †, Sepp M# †, Yamada T# †,
Schäfer P, Trost N, Schmidt J, Schneider C, Drummer C, Mißbach S, Taskiran I, Hecker N, González-Blas C, Kempnyck N,
Frömel R, Joshi P, Leushkin E, Arnskötter F, Leiss K, Okonechnikov K, Lisgo S, Palkovits M, Pääbo S, Cardoso-Moreira M,
Kutscher L, Behr R, Pfister S, Aerts S†, Kaessmann H†.
The evolution of gene regulation in mammalian cerebellum development.
bioRxiv (2025).
Link / Code / App
Joshi P, Stelzer T, Okonechnikov K, Sarropoulos I, Sepp M, Pour-Jamnani MV,
Rademacher A, Yamada T, Schneider C, Schmidt J, Hecker N,
González-Blas CB, Kempynck N, Frömel R, Leushkin E, Arnskötter F,
Leiss K, Lisgo S, Palkovits M, Pääbo S, Cardoso-Moreira M,
Kutscher L, Behr R, Pfister S, Aerts S, Kaessmann H.
Gene regulatory network landscape of Group 3/4 medulloblastoma.
bioRxiv (2024).
Link
Peer-reviewed articles
Okonechnikov K#, Joshi P#,
Körber V, Rademacher A, Bortolomeazzi, Mallm J, Vaillant J, da Silva P, Statz B, Sepp M, Sarropoulos I, Yamada T,
Wittmann A, Schramm K, Blattner-Johnson M, Fiesel P, Jones B, Jäger N, Milde T, Pajtler K, van Tilburg C, Witt O, Bochennek K,
Weber K, Nonnenmacher L, Reimann C, Ghasemi D, Schüller U, Mynarek M, Rutkowski S, Jones D, Korshunov A,
Rippe K, Westermann F, Thongjuea S, Höfer T, Kaessmann H, Kutscher L†, Pfister S†.
Oncogene aberrations drive medulloblastoma progression, not initiation.
Nature (2025).
Link
Yamada T# †, Shi S# †.
Estimating Infection-Related Human Mobility Networks Based on Time Series Data of COVID-19 Infection in Japan.
Applied Sciences (2022).
Link / Code
Yamada T#, Shi S#, Ueda HR†.
A design principle of spindle oscillations in mammalian sleep.
iScience (2022).
Link / Press Release (Japanese) / Code
#: equal contribution
†: correspondence